Glyma17g12940 - SoyBase

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Report for Sequence Feature Glyma17g12940

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9856908
stop:	9861363
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g12940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08510	AT	Annotation by Michelle Graham. TAIR10: fatty acyl-ACP thioesterases B \| chr1:2691546-2693409 REVERSE LENGTH=412	SoyBase	E_val: 0	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0000036	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0016297	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acyl-[acyl-carrier-protein] hydrolase activity	SoyBase	N/A	ISS
GO:0016790	GO-mf	Annotation by Michelle Graham. GO Molecular Function: thiolester hydrolase activity	SoyBase	N/A	ISS
PF01643	PFAM	Acyl-ACP thioesterase	JGI		ISS
PF12590	PFAM	Acyl-ATP thioesterase	JGI		ISS
UniRef100_F6GPL6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ACP-thioesterase protein n=2 Tax=Glycine max RepID=F6GPL6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_F6GPL6	UniRef	Annotation by Michelle Graham. Best UniRef hit: ACP-thioesterase protein n=2 Tax=Glycine max RepID=F6GPL6_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma17g12940

Locus	Gene Symbol	Protein Name
	FATB1B	myristoyl-acyl carrier protein thioesterase

Expression Patterns of Glyma17g12940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g12940

Paralog	Evidence	Comments
Glyma05g08060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g12940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g120400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g12940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g12940

Limit To All Plant Sequences

>Glyma17g12940.4   sequence type=transcript   gene model=Glyma17g12940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAATTCCTTATCCCAATCAACACATAATAAAGAGAGCATTACATTACAATAACTCTGTCTCTCTTTTTTAAAATTAGGGAAACAAGGAAGCAAAATGACACAATAGTCCTTCTTCCCTGTTTCCACTTTCCAGGTTTTCTCCTTCTCGTTTGTTGAGCGCTTTTCTCTCCCTCTCCCTCTTCTTCACTCAGTCAGCTGCCGTAGAAATTCATTATGGTGGCAACAGCTGCAACTTCATCATTTTTCCCTGTTACTTCACCCTCGCCGGACTCTGGTGGAGCAGGCAGCAAACTTGGTGGTGGGCCTGCGAACCTTGGAGGTCTAAAATCCAAATCTGTGTCTTCTGGTGGCTTGAAGGCAAAGGCACAAGCCCCTTTGAAAATTAATGGAACCACAGTTGTTACATCTAAAGAAATCTTGAAGCATGAGGATGATCTACCTTCACCTCCCCCCAGGACTTTTATCAACCAGTTACCTGATTGGAGCATGCTTCTTGCTGCCATTACAACAATTTTCTTGGCAGCTGAAAAGCAGTGGATGATGCTTGATTGGAAGCCAAGGCGACCTGACATGCTTATTGACCCCTTTGGGATAGGAAAAATTGTTCAGGATGGTCTCGTGTTCCGTGAAAACTTTTCTATTAGATCATATGAGATTGGTGCTGATCGAACCGCATCTATAGAAACAGTAATGAACCATTTGCAAGAAACTGCACTTAATCATGTTAAAAGTGCTGGGCTTCTTGGTGATGGCTTCGGTTCCACGCCAGAAATGTGCAAAAAGAACTTGATATGGGTAGTTACTCGGATGCAGGTTGTGGTGGATCGCTATCCTACATGGGGTGACGTAGTTCAAGTAGACACCTGGGCTTCTGGATCAGGGAAGAATGCTATGCGCCGTGATTGGGTTTTACGTGACTGCAAAACTGGTGAAATCTTGACAAGAGCTTCCAGTGTTTGGGTCATGATGAATAAGCTGACACGGAGGCTGTCTAAAATTCCAGAAGAAGTCAGACAGGAGATAGGATCTTATTTTGTGGATTCTGATCCAATTCTAGAAGAGGATAACAGAAAACTGACTAAACTTGACGACAACACAGCAGATTATATTCGTACCGGTTTAAGTTCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGAGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCGTGACTTTAGAGTATAGGAGGGAGTGTGGTAGGGACAGTGTGCTGGATTCCCTGACTGCTGTATCTGGGGCCGACATGGGCAATCTAGCTCACAGTGGACATGTTGAGTGCAAGCATTTGCTTCGACTCGAAAATGGTGCTGAGATTGTGAGGGGCAGGACTGAGTGGAGGCCCAAACCTATGAACAACATTGGTGTTGTGAACCAGGTTCCAGCAGAAAGCACCTAAGATTTTGAAATGGTTAACGGTTGGAGTTGCATCAGTCTCCTTGCTATGTTTAGACTTATTCTGGCCCCTGGGGAGAGTTTTGCTTGTGTCTGTCCAATCAATCTACATATCTTTATATCCTTCTAATTTGTGTTACTTTGGTGGGTAAGGGGGAAAAGCTGCAGTAAACCTCATTCTCTCTTTCTGCTGCTCCATATTTCATTTCATCTCTGATTGCGCTACTGCTAGGCTGTCTTCAATATTTAATTGCTTGATCAAAATAGCTAGGCATGTATATTATTATTCTTTTCTCTTGGCTCAATTAAAGATGCAATTTTCATTGTGAACACAGCATAATTATTATTCTTATTATTTTTGTATAGCCTGTATGCAAGAATGACTTGTCCATCCAATACAACCGTGATTGTATGCTCCAGCGTGTATTTATGCAAGCTTCCCACATGGGAATTATTGTGTGCAAAACATCCCTTCTCCTTCAAGCCTGTTATAATAATACTTATTATCTTAA

>Glyma17g12940.5   sequence type=transcript   gene model=Glyma17g12940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAATTCCTTATCCCAATCAACACATAATAAAGAGAGCATTACATTACAATAACTCTGTCTCTCTTTTTTAAAATTAGGGAAACAAGGAAGCAAAATGACACAATAGTCCTTCTTCCCTGTTTCCACTTTCCAGGTTTTCTCCTTCTCGTTTGTTGAGCGCTTTTCTCTCCCTCTCCCTCTTCTTCACTCAGTCAGAGATCCAACTCCTCATATAATTCAAGACAAAATCCCGCGTTTTCTGCATTTCTAGACGTTCTACCCTACAAGCTGCCGTAGAAATTCATTATGGTGGCAACAGCTGCAACTTCATCATTTTTCCCTGTTACTTCACCCTCGCCGGACTCTGGTGGAGCAGGCAGCAAACTTGGTGGTGGGCCTGCGAACCTTGGAGGTCTAAAATCCAAATCTGTGTCTTCTGGTGGCTTGAAGGCAAAGGCACAAGCCCCTTTGAAAATTAATGGAACCACAGTTGTTACATCTAAAGAAATCTTGAAGCATGAGGATGATCTACCTTCACCTCCCCCCAGGACTTTTATCAACCAGTTACCTGATTGGAGCATGCTTCTTGCTGCCATTACAACAATTTTCTTGGCAGCTGAAAAGCAGTGGATGATGCTTGATTGGAAGCCAAGGCGACCTGACATGCTTATTGACCCCTTTGGGATAGGAAAAATTGTTCAGGATGGTCTCGTGTTCCGTGAAAACTTTTCTATTAGATCATATGAGATTGGTGCTGATCGAACCGCATCTATAGAAACAGTAATGAACCATTTGCAAGAAACTGCACTTAATCATGTTAAAAGTGCTGGGCTTCTTGGTGATGGCTTCGGTTCCACGCCAGAAATGTGCAAAAAGAACTTGATATGGGTAGTTACTCGGATGCAGGTTGTGGTGGATCGCTATCCTACATGGGGTGACGTAGTTCAAGTAGACACCTGGGCTTCTGGATCAGGGAAGAATGCTATGCGCCGTGATTGGGTTTTACGTGACTGCAAAACTGGTGAAATCTTGACAAGAGCTTCCAGTGTTTGGGTCATGATGAATAAGCTGACACGGAGGCTGTCTAAAATTCCAGAAGAAGTCAGACAGGAGATAGGATCTTATTTTGTGGATTCTGATCCAATTCTAGAAGAGGATAACAGAAAACTGACTAAACTTGACGACAACACAGCAGATTATATTCGTACCGGTTTAAGTTCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGAGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCGTGACTTTAGAGTATAGGAGGGAGTGTGGTAGGGACAGTGTGCTGGATTCCCTGACTGCTGTATCTGGGGCCGACATGGGCAATCTAGCTCACAGTGGACATGTTGAGTGCAAGCATTTGCTTCGACTCGAAAATGGTGCTGAGATTGTGAGGGGCAGGACTGAGTGGAGGCCCAAACCTATGAACAACATTGGTGTTGTGAACCAGGTTCCAGCAGAAAGCACCTAAGATTTTGAAATGGTTAACGGTTGGAGTTGCATCAGTCTCCTTGCTATGTTTAGACTTATTCTGGCCCCTGGGGAGAGTTTTGCTTGTGTCTGTCCAATCAATCTACATATCTTTATATCCTTCTAATTTGTGTTACTTTGGTGGGTAAGGGGGAAAAGCTGCAGTAAACCTCATTCTCTCTTTCTGCTGCTCCATATTTCATTTCATCTCTGATTGCGCTACTGCTAGGCTGTCTTCAATATTTAATTGCTTGATCAAAATAGCTAGGCATGTATATTATTATTCTTTTCTCTTGGCTCAATTAAAGATGCAATTTTCATTGTGAACACAGCATAATTATTATTCTTATTATTTTTGTATAGCCTGTATGCAAGAATGACTTGTCCATCCAATACAACCGTGATTGTATGCTCCAGCGTGTATTTATGCAAGCTTCCCACATGGGAATTATTGTGTGCAAAACATCCCTTCTCCTTCAAGCCTGTTATAATAATACTTATTATCTTAA

Coding sequences of Glyma17g12940

Limit To All Plant Sequences

>Glyma17g12940.3   sequence type=CDS   gene model=Glyma17g12940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCAACAGCTGCAACTTCATCATTTTTCCCTGTTACTTCACCCTCGCCGGACTCTGGTGGAGCAGGCAGCAAACTTGGTGGTGGGCCTGCGAACCTTGGAGGTCTAAAATCCAAATCTGTGTCTTCTGGTGGCTTGAAGGCAAAGGCACAAGCCCCTTTGAAAATTAATGGAACCACAGTTGTTACATCTAAAGAAATCTTGAAGCATGAGGATGATCTACCTTCACCTCCCCCCAGGACTTTTATCAACCAGTTACCTGATTGGAGCATGCTTCTTGCTGCCATTACAACAATTTTCTTGGCAGCTGAAAAGCAGTGGATGATGCTTGATTGGAAGCCAAGGCGACCTGACATGCTTATTGACCCCTTTGGGATAGGAAAAATTGTTCAGGATGGTCTCGTGTTCCGTGAAAACTTTTCTATTAGATCATATGAGATTGGTGCTGATCGAACCGCATCTATAGAAACAGTAATGAACCATTTGCAAGAAACTGCACTTAATCATGTTAAAAGTGCTGGGCTTCTTGGTGATGGCTTCGGTTCCACGCCAGAAATGTGCAAAAAGAACTTGATATGGGTAGTTACTCGGATGCAGGTTGTGGTGGATCGCTATCCTACATGGGGTGACGTAGTTCAAGTAGACACCTGGGCTTCTGGATCAGGGAAGAATGCTATGCGCCGTGATTGGGTTTTACGTGACTGCAAAACTGGTGAAATCTTGACAAGAGCTTCCAGTGTTTGGGTCATGATGAATAAGCTGACACGGAGGCTGTCTAAAATTCCAGAAGAAGTCAGACAGGAGATAGGATCTTATTTTGTGGATTCTGATCCAATTCTAGAAGAGGATAACAGAAAACTGACTAAACTTGACGACAACACAGCAGATTATATTCGTACCGGTTTAAGTTCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGAGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCGTGACTTTAGAGTATAGGAGGGAGTGTGGTAGGGACAGTGTGCTGGATTCCCTGACTGCTGTATCTGGGGCCGACATGGGCAATCTAGCTCACAGTGGACATGTTGAGTGCAAGCATTTGCTTCGACTCGAAAATGGTGCTGAGATTGTGAGGGGCAGGACTGAGTGGAGGCCCAAACCTATGAACAACATTGGTGTTGTGAACCAGGTTCCAGCAGAAAGCACCTAA

>Glyma17g12940.4   sequence type=CDS   gene model=Glyma17g12940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCAACAGCTGCAACTTCATCATTTTTCCCTGTTACTTCACCCTCGCCGGACTCTGGTGGAGCAGGCAGCAAACTTGGTGGTGGGCCTGCGAACCTTGGAGGTCTAAAATCCAAATCTGTGTCTTCTGGTGGCTTGAAGGCAAAGGCACAAGCCCCTTTGAAAATTAATGGAACCACAGTTGTTACATCTAAAGAAATCTTGAAGCATGAGGATGATCTACCTTCACCTCCCCCCAGGACTTTTATCAACCAGTTACCTGATTGGAGCATGCTTCTTGCTGCCATTACAACAATTTTCTTGGCAGCTGAAAAGCAGTGGATGATGCTTGATTGGAAGCCAAGGCGACCTGACATGCTTATTGACCCCTTTGGGATAGGAAAAATTGTTCAGGATGGTCTCGTGTTCCGTGAAAACTTTTCTATTAGATCATATGAGATTGGTGCTGATCGAACCGCATCTATAGAAACAGTAATGAACCATTTGCAAGAAACTGCACTTAATCATGTTAAAAGTGCTGGGCTTCTTGGTGATGGCTTCGGTTCCACGCCAGAAATGTGCAAAAAGAACTTGATATGGGTAGTTACTCGGATGCAGGTTGTGGTGGATCGCTATCCTACATGGGGTGACGTAGTTCAAGTAGACACCTGGGCTTCTGGATCAGGGAAGAATGCTATGCGCCGTGATTGGGTTTTACGTGACTGCAAAACTGGTGAAATCTTGACAAGAGCTTCCAGTGTTTGGGTCATGATGAATAAGCTGACACGGAGGCTGTCTAAAATTCCAGAAGAAGTCAGACAGGAGATAGGATCTTATTTTGTGGATTCTGATCCAATTCTAGAAGAGGATAACAGAAAACTGACTAAACTTGACGACAACACAGCAGATTATATTCGTACCGGTTTAAGTTCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGAGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCGTGACTTTAGAGTATAGGAGGGAGTGTGGTAGGGACAGTGTGCTGGATTCCCTGACTGCTGTATCTGGGGCCGACATGGGCAATCTAGCTCACAGTGGACATGTTGAGTGCAAGCATTTGCTTCGACTCGAAAATGGTGCTGAGATTGTGAGGGGCAGGACTGAGTGGAGGCCCAAACCTATGAACAACATTGGTGTTGTGAACCAGGTTCCAGCAGAAAGCACCTAA

>Glyma17g12940.5   sequence type=CDS   gene model=Glyma17g12940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCAACAGCTGCAACTTCATCATTTTTCCCTGTTACTTCACCCTCGCCGGACTCTGGTGGAGCAGGCAGCAAACTTGGTGGTGGGCCTGCGAACCTTGGAGGTCTAAAATCCAAATCTGTGTCTTCTGGTGGCTTGAAGGCAAAGGCACAAGCCCCTTTGAAAATTAATGGAACCACAGTTGTTACATCTAAAGAAATCTTGAAGCATGAGGATGATCTACCTTCACCTCCCCCCAGGACTTTTATCAACCAGTTACCTGATTGGAGCATGCTTCTTGCTGCCATTACAACAATTTTCTTGGCAGCTGAAAAGCAGTGGATGATGCTTGATTGGAAGCCAAGGCGACCTGACATGCTTATTGACCCCTTTGGGATAGGAAAAATTGTTCAGGATGGTCTCGTGTTCCGTGAAAACTTTTCTATTAGATCATATGAGATTGGTGCTGATCGAACCGCATCTATAGAAACAGTAATGAACCATTTGCAAGAAACTGCACTTAATCATGTTAAAAGTGCTGGGCTTCTTGGTGATGGCTTCGGTTCCACGCCAGAAATGTGCAAAAAGAACTTGATATGGGTAGTTACTCGGATGCAGGTTGTGGTGGATCGCTATCCTACATGGGGTGACGTAGTTCAAGTAGACACCTGGGCTTCTGGATCAGGGAAGAATGCTATGCGCCGTGATTGGGTTTTACGTGACTGCAAAACTGGTGAAATCTTGACAAGAGCTTCCAGTGTTTGGGTCATGATGAATAAGCTGACACGGAGGCTGTCTAAAATTCCAGAAGAAGTCAGACAGGAGATAGGATCTTATTTTGTGGATTCTGATCCAATTCTAGAAGAGGATAACAGAAAACTGACTAAACTTGACGACAACACAGCAGATTATATTCGTACCGGTTTAAGTTCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGACTGGATTCTGGAGAGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCGTGACTTTAGAGTATAGGAGGGAGTGTGGTAGGGACAGTGTGCTGGATTCCCTGACTGCTGTATCTGGGGCCGACATGGGCAATCTAGCTCACAGTGGACATGTTGAGTGCAAGCATTTGCTTCGACTCGAAAATGGTGCTGAGATTGTGAGGGGCAGGACTGAGTGGAGGCCCAAACCTATGAACAACATTGGTGTTGTGAACCAGGTTCCAGCAGAAAGCACCTAA

Predicted protein sequences of Glyma17g12940

Limit To All Plant Sequences

>Glyma17g12940.3   sequence type=predicted peptide   gene model=Glyma17g12940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVATAATSSFFPVTSPSPDSGGAGSKLGGGPANLGGLKSKSVSSGGLKAKAQAPLKINGTTVVTSKEILKHEDDLPSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRPDMLIDPFGIGKIVQDGLVFRENFSIRSYEIGADRTASIETVMNHLQETALNHVKSAGLLGDGFGSTPEMCKKNLIWVVTRMQVVVDRYPTWGDVVQVDTWASGSGKNAMRRDWVLRDCKTGEILTRASSVWVMMNKLTRRLSKIPEEVRQEIGSYFVDSDPILEEDNRKLTKLDDNTADYIRTGLSSRWSDLDINQHVNNVKYIDWILESAPQPILESHELSSVTLEYRRECGRDSVLDSLTAVSGADMGNLAHSGHVECKHLLRLENGAEIVRGRTEWRPKPMNNIGVVNQVPAEST*

>Glyma17g12940.4   sequence type=predicted peptide   gene model=Glyma17g12940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVATAATSSFFPVTSPSPDSGGAGSKLGGGPANLGGLKSKSVSSGGLKAKAQAPLKINGTTVVTSKEILKHEDDLPSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRPDMLIDPFGIGKIVQDGLVFRENFSIRSYEIGADRTASIETVMNHLQETALNHVKSAGLLGDGFGSTPEMCKKNLIWVVTRMQVVVDRYPTWGDVVQVDTWASGSGKNAMRRDWVLRDCKTGEILTRASSVWVMMNKLTRRLSKIPEEVRQEIGSYFVDSDPILEEDNRKLTKLDDNTADYIRTGLSSRWSDLDINQHVNNVKYIDWILESAPQPILESHELSSVTLEYRRECGRDSVLDSLTAVSGADMGNLAHSGHVECKHLLRLENGAEIVRGRTEWRPKPMNNIGVVNQVPAEST*

>Glyma17g12940.5   sequence type=predicted peptide   gene model=Glyma17g12940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVATAATSSFFPVTSPSPDSGGAGSKLGGGPANLGGLKSKSVSSGGLKAKAQAPLKINGTTVVTSKEILKHEDDLPSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRPDMLIDPFGIGKIVQDGLVFRENFSIRSYEIGADRTASIETVMNHLQETALNHVKSAGLLGDGFGSTPEMCKKNLIWVVTRMQVVVDRYPTWGDVVQVDTWASGSGKNAMRRDWVLRDCKTGEILTRASSVWVMMNKLTRRLSKIPEEVRQEIGSYFVDSDPILEEDNRKLTKLDDNTADYIRTGLSSRWSDLDINQHVNNVKYIDWILESAPQPILESHELSSVTLEYRRECGRDSVLDSLTAVSGADMGNLAHSGHVECKHLLRLENGAEIVRGRTEWRPKPMNNIGVVNQVPAEST*

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